David Baker (biochemist)

For other people named David Baker, see David Baker (disambiguation).

David Baker
David Baker at the summit of Spark Plug Mountain, Washington, July 31, 2013
Born	(1962-10-06) October 6, 1962
Fields	computational biologist
Institutions	University of Washington Howard Hughes Medical Institute
Alma mater	University of California, Berkeley University of California, San Francisco
Doctoral advisor	Randy Schekman
Other academic advisors	David Agard
Known for	Protein structure prediction Rosetta@Home Fold.it
Notable awards	Beckman Young Investigators Award Overton Prize Feynman Prize in Nanotechnology
Spouse	Hannele Ruohola-Baker
Website www.bakerlab.org

David Baker (born October 6, 1962 in Seattle, Washington) is an American biochemist and computational biologist who has pioneered methods to predict and design the three-dimensional structures of proteins. He is a Professor of Biochemistry at the University of Washington (UW), where he is the principal investigator of the 60+ member Baker laboratory. He serves as the Director and Safety Officer of the Rosetta Commons, a consortium of labs and researchers that develop biomolecular structure prediction and design software. He is a Howard Hughes Medical Institute investigator and a member of the United States National Academy of Sciences.

Life

The Baker laboratory developed the Rosetta algorithm for ab initio protein structure prediction, which has been extended to a distributed computing project called Rosetta@Home and Foldit. The project aims to produce structural models for protein complexes as well as individual polypeptide chains. The Baker group participates regularly and is recognized for expertise in the CASP structure prediction experiment using ab initio methods, including both manually assisted and automated variants of the Rosetta protocol.

Members of the Baker group are also active in the field of protein design; they are recognized as the first group to have designed a protein, known as Top7, with an entirely novel fold.

Baker did his graduate work in biochemistry at the University of California, Berkeley in the laboratory of Randy Schekman, where he worked predominantly on protein transport and trafficking in yeast. He did his postdoctoral work with David Agard of University of California, San Francisco.

Although well known for development of methods for computational prediction of protein structure and function, Baker is focused on the use of computational methods to drive experimental assessment of biology and therefore the Baker laboratory maintains an active experimental biochemistry group.

For his work on protein folding, Baker received the 2008 Sackler International Prize in Biophysics. Baker was elected a Fellow of the American Academy of Arts and Sciences in 2009. He is married to Hannele Ruohola-Baker, another biochemist at UW. They have two college-age children.

External links

• David Baker online talk: "Crowd Sourcing Protein Folding: Rosetta@Home and FoldIt"
• David Baker online seminar: "Introduction to Protein Design"
• David Baker online seminar: "Design of New Protein Functions"

• http://www.bakerlab.org Baker laboratory website
• http://boinc.bakerlab.org/rosetta/ Rosetta@home project homepage
• http://www.sciencemag.org/content/302/5649/1364.short